May 10, 2017

The Cray will be down for scheduled maintenance 5am – 8am, Wednesday, May 17.  Please finish all running jobs by this time.

November 10, 2015

Colleagues:

I am corresponding to update you on several aspects of our ISTeC High-Performance Computing (HPC) Initiatives:

  1. The HPC system to be purchased under the joint NSF $3 million MRI award to CSU and UC-Boulder is in the purchasing process, and is scheduled to be available by April 2016. The system will be installed and operated by CU Boulder, to which we are fiber connected with excellent connectivity. That system is anticipated to have more than 20X the computing power of CSU’s Cray, including GPUs (Graphics Processing Units) and Intel MIC (any Integrated Core) Accelerators.
  2. Two identical meetings have been scheduled to discuss with faculty and departments the “condominium HPC model,” where faculty and departments may buy compute nodes dedicated to their own purposes. Options being explored now and that will be discussed are i) installation at CSU, or ii) adding nodes to the HPC system mentioned above in item #1. These meetings are scheduled in Morgan Library’s Event Hall as follows; you are encouraged to attend:11/16: 10-11 AM
    11/20: 3-4 PM
  3. A visualization distance education course will be taught in Spring semester 2016 by visualization experts at CU Boulder, and is available to students at CSU under the auspices of GRAD 511, with myself as the instructor at CSU. The class will be taught once per week on Tuesday evenings from 6:30-9:00 PM. Students must register for both sections of GRAD 511, CRNs: 26375 and 26376. For more information, see Research Computing – Scientific Visualization Class – 2016.

If you have any questions concerning any of the above, please feel free to contact me forthwith.

Best regards,

Patrick J. Burns
Dean of Libraries and VP for IT
Colorado State University
Fort Collins, CO 80523-1019
(970) 491-1833


July 29, 2015

RMACC HPC Symposium Announcement

The Annual Rocky Mountain High Performance Computing Symposium will be held Aug. 11-13, 2015 in Boulder, CO.

Advance program and registration information are available at https://rmacc.org/HPCSymposium. It has many useful sessions for novice to experienced supercomputing researchers, programmers, administrators and users.

Please also encourage your students to submit a poster or attend. There are still a number of travel grants left to cover student registration and travel.

The symposium is being organized by the Rocky Mountain Advanced Computing Consortium (RMACC).

Anura Jayasumana
Associate Director, ISTeC


July 14, 2015

Metatranscriptomics Pipeline

In conjunction with the CSU Next Generation Sequencing Core, we have installed a metatranscriptomics pipeline on the CSU Cray, derived from a paper by Haas et al. Metatranscriptomics is a Next Generation Sequencing protocol for studying gene expression in communities of organisms. The NGS Core provides two DNA sequencers that are appropriate for metatranscriptomics research – Illumina NextSeq and Ion Proton. Data generated by these Core instruments can be fed directly to the Haas pipeline. The Cray handles several computationally intensive de novo assembly steps, thus improving time to solution. The Cray-Haas pipeline has been used successfully on microbiological samples. For more information about the metatranscriptomics pipeline and how you might use it on the Cray and in conjunction with Core facilities, contact the Core at ngscore@colostate.edu.


April 7, 2015

Upgrade Complete

The upgraded Cray XE6 is now in full production. Please note the following change to the login node:

Login node URL: cray2.colostate.edu
Login node IP address: 129.82.175.4

If you have any issues or problems connecting to the login node, please contact Richard Casey at richard.casey@colostate.edu or 970-492-4127.